Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs916740 chr7:20704250 C/T 1.45E-7 487 23.8 21.73 14.37 KM Plot
LGG rs916741 chr7:20704271 C/G 1.58E-7 486 23.72 21.73 14.37 KM Plot
LGG rs917831 chr7:127584608 T/A 5.03E-6 504 16.23 24.1 22.6 KM Plot
LGG rs918049 chr2:40358526 T/C 1.43E-5 508 22.78 21.7 7.13 KM Plot
LGG rs9323424 chr14:24418528 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9323425 chr14:24418547 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9323426 chr14:24418655 G/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9323428 chr14:24418752 T/A 3.47E-5 506 23.58 21 15.53 KM Plot
LGG rs9323429 chr14:24418771 A/G 3.47E-5 506 23.58 21 15.53 KM Plot
LGG rs9463887 chr6:53108676 C/A 1.16E-5 508 22.57 23.5 14.8 KM Plot
LGG rs9463888 chr6:53109761 T/C 1.69E-5 508 22.47 22.87 14.8 KM Plot
LGG rs9463890 chr6:53111466 T/C 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs9463891 chr6:53111497 G/A 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs9463892 chr6:53111597 A/T 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs9474460 chr6:53108682 G/C 1.16E-5 508 22.57 23.5 14.8 KM Plot